The IGVF Catalog integrates and links out to a number of trusted, external resources. Below is a consolidated list of sources that power various data panels across the app. Where possible, each panel also provides per-row source links and consistent attribution.
To keep results fast and focused, responses returned by our internal endpoints may be normalized and filtered before display. Typical processing includes:
Developers can inspect an endpoint's exact URL, applied filters, and transformation steps with the X-ray view in data panels where available.
Object Type | Source | Link |
---|---|---|
Variants | FAVOR (dbSNP155) | Visit |
Genes, Proteins, Transcripts, Human | GENCODE v43 | Visit |
Genes, Proteins, Transcripts, Mouse | GENCODE m33 | Visit |
Proteins | UniProt | Visit |
QTLs | EBI QTL Catalogue | Visit |
QTLs | AFGR | Visit |
eQTLs | GTEx | Visit |
pQTLs | UK Biobank Plasma Proteomic Profiles | Visit |
Motifs | HOCOMOCO v11 | Visit |
Allele specific binding | AdAstra | Visit |
Allele specific binding | GVATdb | Visit |
Protein Protein Interactions, Genetic Interactions | BioGRID | Visit |
Protein Protein Interactions | IntAct | Visit |
Gene Co-expression | CoXpressDB | Visit |
Pathways | Reactome | Visit |
GWAS studies | OpenTargets | Visit |
Macromolecular Complexes | EBI Complex Portal | Visit |
Varian/Gene/Drug Associations | PharmGKB | Visit |
Rare Disease Genes | Orphanet | Visit |
Variant-Gene-Disease Associations | ClinGen | Visit |
Human-Mouse Orthologies | Mouse Genome Informatics | Visit |
Coding Variants | dbNSFP 4.1 | Visit |
Linkage Disequilibria | TopLD | Visit |
Cancer Gene Dependency | DepMap | Visit |
Protein variant phenotypes | VAMP-seq | Visit |